Human PBMC / Using 30 Biomarkers
t-SNE gating analysis of immune cell subsets. Immune cell subsets were identified and manually gated in the t-SNE space according to the signal strength of the phenotypic marker.
t-SNE gating analysis of T lymphocyte subsets. T lymphocyte subsets were identified and manually gated in the t-SNE space according to the signal strength of the phenotypic marker.
Expression of biomarker displayed on t-SNE plot.
SPADE presents a spanning tree analysis of density normalization events. Through a combination of downsampling, clustering and minimal spanning tree, it provides intuitive visualization of high-dimensional single cell data to support data-driven cellular heterogeneity analysis.